TEA

Browse Projects

From here you can browse all the projects created in TEA if the project is set for "open to public" by project owners/ data submitters.

List all projects stored in TEA with their status and contact information.

New Submission

You can submit your data to create your own projects! All you need is the tab-delimited file, called mtable, derived from the mapping result of your experiment datasets. This inhouse scripts EpiMolas.jargenerates six measurements for each gene described in the gtf. The six measurements includes three sequence contexts (CG, CHG, CHH) and two gene rgions (promoter and gene body) (i.e. pmt_CG, pmt_CHG, pmt_CHH, gene_CG, gene_CHG, gene_CHH).

Currently, two BS-seq alignment output formats are supported: CGmap by BS-Seeker2 and CX_report by Bismark.

We assume that you had already get the mtable for website data deployment. If not, please:

Check the mtable section for the usage of EpiMolas. It converts the mapping summary report to mtable.
Check the mapping section if you did not complete the mapping process yet.

Click on "New Submission" on TEA navigator bar:

Select files one by one for each mtable, then click 'upload file'. Press '+' or '-' to add/remove the upload slot.

If you do not have mtable files yet, you may click the button "demo" to know about TEA data upload process.
You can press "Load example data" button to try on the TEA data deployment using a demo dataset. Then try on TEA's analysis.
You can to try on the TEA Demo Site if you want to get familiar to TEA's analysis.

The ID matching condition on the upload file and TEA annotation db will be previewed before constructing website. Please check the mapping rate. If low mapping rate is concluded from the uploaded mtable, please check the reference genome and gtf first to see whether it is the source of incompatibility of your set to our database.

"Just a try without project creation" provides a dynamic web link for one month access. Users are welcome to fill in the form to receive email notification once your project is created.

Project will be created in few minutes. Not long after that, webpage will show 'Data Deployment Success!' for project has been successfully created.

Now http://tea.iis.sinica.edu.tw/1464852884894/ is the main portal of your project !

Check submitted Jobs

Click on "Ckeck Submitted Jobs" allow you to manage the project you have created .

If you are registered users (in that case, TEA will provide a static web link for your project), you can browse, edit library names, and delete your projects.